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Journal Articles

Deciphering the “Art” in Modeling and Simulation of the Knee Joint: Assessing Model Calibration Workflows and Outcomes

Thor E. Andreassen, Peter J. Laz, Ahmet Erdemir, Thor F. Besier, Jason P. Halloran, Carl W. Imhauser, Snehal Chokhandre, Ariel Schwartz, Neda Abdollahi Nohouji, Nynke B. Rooks, Marco T. Y. Schneider, Shady Elmasry, William Zaylor, Donald R. Hume, Kevin B. Shelburne
Journal: Journal of Biomechanical Engineering
Publisher: ASME
Article Type: Research-Article
J Biomech Eng. December 2023, 145(12): 121008.
Paper No: BIO-23-1129
https://doi.org/10.1115/1.4063627
Published Online: October 26, 2023
View Article titled, Deciphering the “Art” in Modeling and Simulation of the Knee Joint: Assessing Model Calibration Workflows and Outcomes
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Topics: Calibration, Knee, Teams, Modeling, Kinematics, Workflow, Simulation
Journal Articles

A Method to Compare Heterogeneous Types of Bone and Cartilage Meshes

Nynke B. Rooks, Marco T. Y. Schneider, Ahmet Erdemir, Jason P. Halloran, Peter J. Laz, Kevin B. Shelburne, Donald R. Hume, Carl W. Imhauser, William Zaylor, Shady Elmasry, Ariel Schwartz, Snehal K. Chokhandre, Neda Abdollahi Nohouji, Thor F. Besier
Journal: Journal of Biomechanical Engineering
Publisher: ASME
Article Type: Research-Article
J Biomech Eng. November 2021, 143(11): 111002.
Paper No: BIO-21-1053
https://doi.org/10.1115/1.4051281
Published Online: July 14, 2021
View Article titled, A Method to Compare Heterogeneous Types of Bone and Cartilage Meshes
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Topics: Bone, Cartilage, Teams
Journal Articles

Deciphering the “Art” in Modeling and Simulation of the Knee Joint: Variations in Model Development

Nynke B. Rooks, Marco T. Y. Schneider, Ahmet Erdemir, Jason P. Halloran, Peter J. Laz, Kevin B. Shelburne, Donald R. Hume, Carl W. Imhauser, William Zaylor, Shady Elmasry, Ariel Schwartz, Snehal K. Chokhandre, Neda Abdollahi Nohouji, Thor F. Besier
Journal: Journal of Biomechanical Engineering
Publisher: ASME
Article Type: Research-Article
J Biomech Eng. June 2021, 143(6): 061002.
Paper No: BIO-20-1435
https://doi.org/10.1115/1.4050028
Published Online: March 9, 2021
View Article titled, Deciphering the “Art” in Modeling and Simulation of the Knee Joint: Variations in Model Development
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Topics: Knee, Model development, Modeling, Performance, Simulation, Teams, Workflow, Computer software, Kinematics
Journal Articles

Journal of Biomechanical Engineering: Legacy Paper 2019

Ahmet Erdemir
Journal: Journal of Biomechanical Engineering
Publisher: ASME
Article Type: Editorial
J Biomech Eng. March 2020, 142(3): 030205.
Paper No: BIO-19-1486
https://doi.org/10.1115/1.4045873
Published Online: March 4, 2020
View Article titled, Journal of Biomechanical Engineering: Legacy Paper 2019
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Topics: Biological tissues, Biomechanical engineering, Biomechanics, Cartilage, Knee, Stress, Pressure
Journal Articles

Deciphering the “Art” in Modeling and Simulation of the Knee Joint: Overall Strategy

Ahmet Erdemir, Thor F. Besier, Jason P. Halloran, Carl W. Imhauser, Peter J. Laz, Tina M. Morrison, Kevin B. Shelburne
Journal: Journal of Biomechanical Engineering
Publisher: ASME
Article Type: Research-Article
J Biomech Eng. July 2019, 141(7): 071002.
Paper No: BIO-18-1516
https://doi.org/10.1115/1.4043346
Published Online: June 5, 2019
View Article titled, Deciphering the “Art” in Modeling and Simulation of the Knee Joint: Overall Strategy
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Journal Articles

Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research

Ahmet Erdemir, Peter J. Hunter, Gerhard A. Holzapfel, Leslie M. Loew, John Middleton, Christopher R. Jacobs, Perumal Nithiarasu, Rainlad Löhner, Guowei Wei, Beth A. Winkelstein, Victor H. Barocas, Farshid Guilak, Joy P. Ku, Jennifer L. Hicks, Scott L. Delp, Michael S. Sacks, Jeffrey A. Weiss, Gerard A. Ateshian, Steve A. Maas, Andrew D. McCulloch, Grace C. Y. Peng
Journal: Journal of Biomechanical Engineering
Publisher: ASME
Article Type: Expert View
J Biomech Eng. February 2018, 140(2): 024701.
Paper No: BIO-17-1530
https://doi.org/10.1115/1.4038768
Published Online: January 23, 2018
View Article titled, Perspectives on Sharing Models and Related Resources in Computational Biomechanics Research
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Topics: Biomechanics, Computer software, Modeling, Simulation
Proceedings Papers

Concurrent Simulation of Neuromuscular Control and Tissue Deformation Is Possible by Adaptive Surrogate Modeling

Jason P. Halloran, Ahmet Erdemir, Antonie J. van den Bogert
Proc. ASME. SBC2008, ASME 2008 Summer Bioengineering Conference, Parts A and B, 763-764, June 25–29, 2008
Publisher: American Society of Mechanical Engineers
Paper No: SBC2008-192631
https://doi.org/10.1115/SBC2008-192631
View Paper titled, Concurrent Simulation of Neuromuscular Control and Tissue Deformation Is Possible by Adaptive Surrogate Modeling
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Topics: Biological tissues, Deformation, Modeling, Simulation, Biomechanics, Databases, Dynamic models, Dynamics (Mechanics), Finite element analysis, Finite element model
Proceedings Papers

An Elaborate Data Set for Mechanical Characterization of the Foot

Pavana Sirimamilla, Ahmet Erdemir, Antonie J. van den Bogert, Jason P. Halloran
Proc. ASME. SBC2008, ASME 2008 Summer Bioengineering Conference, Parts A and B, 769-770, June 25–29, 2008
Publisher: American Society of Mechanical Engineers
Paper No: SBC2008-192867
https://doi.org/10.1115/SBC2008-192867
View Paper titled, An Elaborate Data Set for Mechanical Characterization of the Foot
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Topics: Biological tissues, Biomechanics, Biomedical imaging, Compression, Deformation, Finite element analysis, Materials properties, Mechanical testing, Shear (Mechanics), Stiffness
Proceedings Papers

Concurrent Simulations of Musculoskeletal Movements and Tissue Deformations

Antonie J. van den Bogert, Ahmet Erdemir
Proc. ASME. SBC2007, ASME 2007 Summer Bioengineering Conference, 5-6, June 20–24, 2007
Publisher: American Society of Mechanical Engineers
Paper No: SBC2007-176194
https://doi.org/10.1115/SBC2007-176194
View Paper titled, Concurrent Simulations of Musculoskeletal Movements and Tissue Deformations
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Topics: Biological tissues, Deformation, Engineering simulation, Musculoskeletal system, Simulation, Modeling, Stress, Biomechanics, Dynamics (Mechanics), Finite element analysis
Proceedings Papers

Open Knee: A Pathway to Community Driven Modeling and Simulation in Joint Biomechanics

Ahmet Erdemir
Proc. ASME. FMD2013, ASME 2013 Conference on Frontiers in Medical Devices: Applications of Computer Modeling and Simulation, V001T03A001, September 11–13, 2013
Publisher: American Society of Mechanical Engineers
Paper No: FMD2013-16033
https://doi.org/10.1115/FMD2013-16033
View Paper titled, Open Knee: A Pathway to Community Driven Modeling and Simulation in Joint Biomechanics
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Topics: Joint mechanics, Knee, Modeling, Simulation, Finite element analysis, Biological tissues, Biomechanics, Computer simulation, Finite element model, Injury mechanisms
Proceedings Papers

Surface Stiffness of Patient-Specific Arterial Segments With Varying Plaque Compositions

Craig J. Bennetts, Ahmet Erdemir, Melissa Young
Proc. ASME. FMD2013, ASME 2013 Conference on Frontiers in Medical Devices: Applications of Computer Modeling and Simulation, V001T10A033, September 11–13, 2013
Publisher: American Society of Mechanical Engineers
Paper No: FMD2013-16132
https://doi.org/10.1115/FMD2013-16132
View Paper titled, Surface Stiffness of Patient-Specific Arterial Segments With Varying Plaque Compositions
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Topics: Blood flow, Diseases, Stiffness
Proceedings Papers

Simulation Based Prediction of the Effect of MPFL Reconstruction on Patellofemoral Mechanics

Jason Halloran, Jack Andrish, Ahmet Erdemir
Proc. ASME. FMD2013, ASME 2013 Conference on Frontiers in Medical Devices: Applications of Computer Modeling and Simulation, V001T01A002, September 11–13, 2013
Publisher: American Society of Mechanical Engineers
Paper No: FMD2013-16111
https://doi.org/10.1115/FMD2013-16111
View Paper titled, Simulation Based Prediction of the Effect of MPFL Reconstruction on Patellofemoral Mechanics
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Topics: Simulation, Cartilage, Joint mechanics, Simulation results, Knee, Model validation, Stability, Tendons
Proceedings Papers

Committee on Credible Practice of Modeling and Simulation in Healthcare

Lealem Mulugeta, Ahmet Erdemir
Proc. ASME. FMD2013, ASME 2013 Conference on Frontiers in Medical Devices: Applications of Computer Modeling and Simulation, V001T10A015, September 11–13, 2013
Publisher: American Society of Mechanical Engineers
Paper No: FMD2013-16080
https://doi.org/10.1115/FMD2013-16080
View Paper titled, Committee on Credible Practice of Modeling and Simulation in Healthcare
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Topics: Health care, Modeling, Simulation, Engineering disciplines, Biomedicine, Computational methods, Computer simulation, Decision making, Education, Governments
Proceedings Papers

Role of Patient Specifics on Mechanical Risk and Load Relief During Support of Bony Prominences

Ahmet Erdemir
Proc. ASME. FMD2013, ASME 2013 Conference on Frontiers in Medical Devices: Applications of Computer Modeling and Simulation, V001T10A007, September 11–13, 2013
Publisher: American Society of Mechanical Engineers
Paper No: FMD2013-16034
https://doi.org/10.1115/FMD2013-16034
View Paper titled, Role of Patient Specifics on Mechanical Risk and Load Relief During Support of Bony Prominences
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Topics: Risk, Stress, Biological tissues, Pressure, Curbs (Roads), Health care, Materials properties
Proceedings Papers

A Multiscale Specimen-Specific Data Set to Enable Comprehensive Modeling and Simulation of the Tibiofemoral Joint

Snehal Chokhandre, Ahmet Erdemir
Proc. ASME. FMD2013, ASME 2013 Conference on Frontiers in Medical Devices: Applications of Computer Modeling and Simulation, V001T10A027, September 11–13, 2013
Publisher: American Society of Mechanical Engineers
Paper No: FMD2013-16117
https://doi.org/10.1115/FMD2013-16117
View Paper titled, A Multiscale Specimen-Specific Data Set to Enable Comprehensive Modeling and Simulation of the Tibiofemoral Joint
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Topics: Biological tissues, Decision making, Finite element analysis, Joint mechanics, Mechanical behavior, Modeling, Simulation, Surgery, Wounds
Journal Articles

Open Knee: A Pathway to Community Driven Modeling and Simulation in Joint Biomechanics

Ahmet Erdemir
Journal: Journal of Medical Devices
Publisher: ASME
Article Type: Frontiers Abstracts
J. Med. Devices. December 2013, 7(4): 040910.
Paper No: MED-13-1225
https://doi.org/10.1115/1.4025767
Published Online: December 5, 2013
View Article titled, Open Knee: A Pathway to Community Driven Modeling and Simulation in Joint Biomechanics
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Topics: Joint mechanics, Knee, Modeling, Simulation
Proceedings Papers

Gait Prediction Using Concurrent Musculoskeletal Control and FE Simulations

Jason P. Halloran, Marko Ackermann, Ahmet Erdemir, Antonie J. van den Bogert
Proc. ASME. SBC2009, ASME 2009 Summer Bioengineering Conference, Parts A and B, 1215-1216, June 17–21, 2009
Publisher: American Society of Mechanical Engineers
Paper No: SBC2009-206525
https://doi.org/10.1115/SBC2009-206525
View Paper titled, Gait Prediction Using Concurrent Musculoskeletal Control and FE Simulations
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Topics: Musculoskeletal system, Simulation, Soft tissues, Computational methods, Diabetes, Hinges, Muscle, Osteoarthritis, Shock absorbers, Springs
Proceedings Papers

Comprehensive Identification of Tibiofemoral Joint Anatomy and Mechanical Response: Pathway to Multiscale Characterization

Snehal Chokhandre, Craig Bennetts, Jason Halloran, Robb Colbrunn, Tara Bonner, Morgan H. Jones, Ahmet Erdemir
Proc. ASME. SBC2012, ASME 2012 Summer Bioengineering Conference, Parts A and B, 1089-1090, June 20–23, 2012
Publisher: American Society of Mechanical Engineers
Paper No: SBC2012-80200
https://doi.org/10.1115/SBC2012-80200
View Paper titled, Comprehensive Identification of Tibiofemoral Joint Anatomy and Mechanical Response: Pathway to Multiscale Characterization
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Topics: Anatomy, Multiscale characterization, Knee, Biological tissues, Finite element analysis, Model development, Computer simulation, Decision making, Finite element model, Wounds
Proceedings Papers

Automated Generation of Tissue-Specific Finite Element Models Containing Ellipsoidal Cellular Inclusions

Craig Bennetts, Ahmet Erdemir
Proc. ASME. SBC2012, ASME 2012 Summer Bioengineering Conference, Parts A and B, 1215-1216, June 20–23, 2012
Publisher: American Society of Mechanical Engineers
Paper No: SBC2012-80719
https://doi.org/10.1115/SBC2012-80719
View Paper titled, Automated Generation of Tissue-Specific Finite Element Models Containing Ellipsoidal Cellular Inclusions
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Topics: Biological tissues, Finite element model, Cartilage, Chondrocytes, Finite element analysis, Mechanobiology, Micromechanics (Engineering), Shapes
Proceedings Papers

A Comparison of Hexahedral and Tetrahedral Finite Elements for Biphasic Analysis of Cartilage Micromechanics

Scott Sibole, Craig Bennetts, Ahmet Erdemir
Proc. ASME. SBC2012, ASME 2012 Summer Bioengineering Conference, Parts A and B, 721-722, June 20–23, 2012
Publisher: American Society of Mechanical Engineers
Paper No: SBC2012-80365
https://doi.org/10.1115/SBC2012-80365
View Paper titled, A Comparison of Hexahedral and Tetrahedral Finite Elements for Biphasic Analysis of Cartilage Micromechanics
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Topics: Cartilage, Finite element analysis, Micromechanics (Engineering), Chondrocytes, Composite materials, Construction, Mesh generation, Permeability, Relaxation (Physics), Shapes